If you're looking to run Kubernetes in Azure then the Azure Kubernetes Service (AKS) is what you'll generally be looking at, as it offers a semi-managed solution with PaaS-based management nodes and is by far the simplest and easiest Kubernetes service to use in Azure.
If AKS meets all your needs, then no need to read any further, but for some use cases, it may not. AKS is a new service, it's not gone GA quite yet, and it is still missing some features like the ability to run Windows Containers, support for certain versions of Kubernetes, or maybe you don't want to run Kubernetes at all and want Swarm or Mesos. In this scenario, you could look at using ACS, the old version of Azure Container Service, but this is going to go end-of-life sometime in the next year. This is where ACS Engine comes in handy.
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